Tag Archives: bwa

Lab02/2: first bioinformatics programs

This post is a part of the second laboratory session. Please refer to the main post.

Linux commands like ls and grep are just programs, but they are special because any UNIX like terminal will ship them (for free :).

Now we are going to use a Perl script and an alignment program to perform two tasks:

  • simulate a whole genome shotgun
  • align the reads produced from the shotgun

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